PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC20592_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Dof
Protein Properties Length: 208aa    MW: 21746 Da    PI: 10.666
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC20592_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof29.81.3e-091224162
       zf-Dof 41 tkGGalrnvPvGggrrknkkss 62
                 t+GGalrnvPvGgg+r+nkk++
  RrC20592_p1  1 THGGALRNVPVGGGCRRNKKAK 22
                 8******************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074787.0E-4119IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
THGGALRNVP VGGGCRRNKK AKTGNSKSAS SQTKQSASMV NAPSPTNIQL QTNSQLPFLP  60
TLQNLTQLGG IGLNLAAING NSVGNSNTSS SFFNDLGFYH GANTSGSVMA NNNNENNIMT  120
SLGSASHFAM LDRSMGLYSF PNEGNMVLSS STASRVSQTA PVKREETHVG SISRPVSGLT  180
SAGNQSNQYW PGLSLPGSSS NDRQQHLM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013631775.11e-125PREDICTED: dof zinc finger protein DOF2.2 isoform X2
RefseqXP_013631774.11e-125PREDICTED: dof zinc finger protein DOF2.2 isoform X1
SwissprotQ9ZV336e-90DOF22_ARATH; Dof zinc finger protein DOF2.2
TrEMBLA0A078CKF01e-128A0A078CKF0_BRANA; BnaC04g40070D protein
STRINGBra035667.1-P1e-123(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53361749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28810.21e-78Dof family protein